PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG190300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23248.9 Da    PI: 8.0917
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG190300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.61.9e-241056248
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                         rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi++s++gk+y+
  Pavir.7NG190300.1.p 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVVSPHGKIYD 56
                         8********************************************97 PP

2K-box53.51.1e-1878171799
                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                          ++ e++k++  qqe+  L +ei+  q+ +R + Ge d + ++l eLq Le++Le  l +iR +K++++ ++ie l++ke  lq +n +L+
  Pavir.7NG190300.1.p  78 SESEQNKTQAIQQEVLALTREIDLFQKGLRYIHGEkDTKHMNLGELQALENNLEMWLHNIRFQKMQIMSTEIEMLRNKEGILQAANDTLQ 167
                          3368999***************************857999************************************************** PP

                K-box  96 kkle 99 
                          +++ 
  Pavir.7NG190300.1.p 168 ERII 171
                          9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.525161IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-27177IPR002100Transcription factor, MADS-box
CDDcd002656.59E-37275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-24323IPR002100Transcription factor, MADS-box
PfamPF003195.3E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-243859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2379170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.47685177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVVSP HGKIYDLATN  60
GNMQGLIERY RSYSEMHSES EQNKTQAIQQ EVLALTREID LFQKGLRYIH GEKDTKHMNL  120
GELQALENNL EMWLHNIRFQ KMQIMSTEIE MLRNKEGILQ AANDTLQERI IEQNRILNFS  180
GTVMIPQAPF QLNMESDCYL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-16183181Myocyte-specific enhancer factor 2B
1tqe_Q7e-16183181Myocyte-specific enhancer factor 2B
1tqe_R7e-16183181Myocyte-specific enhancer factor 2B
1tqe_S7e-16183181Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975710.11e-130PREDICTED: MADS-box transcription factor 26-like
SwissprotA2YQK92e-75MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G82e-75MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLK3YEG81e-129K3YEG8_SETIT; Uncharacterized protein
STRINGSi012632m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-56AGAMOUS-like 12